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The squad members were accused of killing a civilian they found asleep in his home after they failed to kidnap a suspected insurgent. Squad members tried to cover up the killing by planting a gun near the victim.
Thomas withdrew his guilty plea on the eve of sentencing after having an "epiphany." His lawyer claimed Thomas was only following orders.
Thomas had faced a mandatory sentence of life in prison if convicted of premeditated murder. Kelley said there was no minimum sentencing requirement for conspiracy and kidnapping. A sentencing hearing was scheduled to begin Thursday.